PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.001G033200.1
Common NameB456_001G033200, LOC105768911
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 191aa    MW: 20945.7 Da    PI: 7.3901
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.001G033200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-18555155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                        ++++GVr++  +g+Wv+eIr+p        +r++lg+f tae Aa+a+++a+  ++g
  Gorai.001G033200.1  5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55
                        59*****999.**********8.....334*********************987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.51E-22564No hitNo description
PROSITE profilePS5103221.983663IPR001471AP2/ERF domain
PfamPF008471.7E-11655IPR001471AP2/ERF domain
SMARTSM003801.0E-37669IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-31663IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-20664IPR016177DNA-binding domain
PRINTSPR003672.9E-10718IPR001471AP2/ERF domain
PRINTSPR003672.9E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MVLTKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGLNAKT  60
NFPVPNSGGD DNGSSPLPAE TLSEFLGAKL KKCCKDQSPS LTCLRLDTDN AHIGVWQKRA  120
GSRSSSNWVM RVELGNKKTT MEDGAASSSS ELSHMVEETE AVGEEDRVAM QMIEELLNWN  180
CPMNSTSAGV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A2e-16568469ATERF1
2gcc_A2e-16568469ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5948327e-52JX594832.1 Gossypium hirsutum clone NBRI_GE30916 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444676.11e-140PREDICTED: ethylene-responsive transcription factor SHINE 2-like
SwissprotQ3E9583e-82SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A0D2LU841e-140A0A0D2LU84_G
STRINGPOPTR_0018s13130.11e-79(Populus trichocarpa)
STRINGAT5G25390.28e-80(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25390.22e-73ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]